| Searching
Tools |
| |
ISI
The Web of Knowledge |
| |
PubMed
|
| |
Yale
University Medical School online journals |
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| Chemistry
Tools |
| |
Periodic
Table – an interactive source of information about
the elements |
| |
Organic
Chemistry Resources – a toolbox for synthetic chemistry |
| |
Aldrich
Substructure Search – search for commercial compounds
with a particular substructure |
| |
Pharmacology
Central – chemical structures of pharmacological
agents |
| |
VassarStats
– statistical tools |
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| Molecular
Biology Tools |
| |
IDT SciTools - A suite of tools to help with design and analysis of oligonucleotides |
| |
Sorvall
Rotor Calculator |
| |
The
Antibody Resource - a guide to commercial antibody suppliers
|
| |
ExPASy
Translate Tool – how to translate a DNA/RNA sequence
into protein |
| |
Sequence
Manipulation Site – format and analyze DNA and protein
sequences |
| |
BLAST
and ClustalW
– DNA and protein sequence alignment tools |
| |
Primer
Design and Primer
Generator – PCR primer design |
| |
RestrictionMapper
– map restriction sites and predict fragment sizes |
| |
Consurf
– locate variable and conserved regions within proteins |
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| Genomics
and Proteomics Tools |
| |
Ensembl
– browse the human, mouse, fly, & zebrafish genomes |
| |
EMBL
Bioinformatics – genome database searching &
analysis |
| |
Express
Yourself – An integrated platform for processing
microarray data |
| |
Yale
Microarray Database – a web-based archive and retrieval
system for storage of microarray data. The microarray convoluter
(MAC) program listed under tools is useful for tracking each
gene spotted on the array. |
| |
PFAM
- a collection of multiple sequence alignments and hidden
Markov models covering many common protein domains. |
| |
Harvard
Institute of Proteomics - information about high-throughput
protein expression protocols as well as FLEXGene, a publicly
available and well-maintainted repository of cDNA clones.
|
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| Protein
structure tools |
| |
PDB
server |
| |
RasMol
- 3D Structure Viewer |
| |
CNS
- Crystallographic/NMR Refinement Software |
| |
Swiss-Prot
PDB Viewer |
| |
O webpage - program for viewing electron density representations
of x-ray structures |
| |
DINO
– freeware that creates surface potential maps |
| |
CCP4
Main Page - Freeware, a collection of scripts used for
many of the
computational jobs involved in crystallographic data refinemen |
| |
INSIGHT
- our licensed modeling software |
| |
SCOP
- structural classification of proteins |
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| Scientific
Resources |
| |
Biological Information Resource
– Links to quality-checked biomedical websites |
| |
Alliance
for Cellular Signaling – Signaling maps & protein
information pages |
| |
Cell
Biology Resource – General info, databases, protocols,
vendors |
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| Literacy
Tools |
| |
Encyclopedia
Britannica |
| |
Oxford
English Dictionary |
| |
The
elements of style |
| |
Yale Writing Prose |
| |
Yale
Web Style Guide |
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|
Databases |
| |
NCBI
– DNA and protein sequence database |
| |
Protein
Information Resource – Protein sequence and classification
database |
| |
PicSNP
– Catalog of human SNPs |
| |
BioMagResBank
– NMR data for proteins, DNA, and RNA |
| |
NBD
Server – DNA and RNA information database |
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| Kinases |
| |
Protein
Kinase Resource – Kinase sequences, protocols, structures,
discussion boards |
| |
Phosphorylation
Site Database – Determine protein phosphorylation
sites |
| |
Scansite
– Search for phosphorylation sites & SH2/14-3-3/etc
binding sites |
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| Protein-protein
interactions |
| |
BIND
– bimolecular interaction network database |
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